ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTATCTGTCAGC mismatches: 1 bulges: 2 |
pre-miRNA
TCACACCAGATTGAGAGAGGCTGACAGAAGAGAGTGAGCACATGCTAGTGGTATTTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCT
GTCAGCTTCCCATTCTTTTTTACT
dot-bracket secondary structure
.......(((.((...(((((((((((((((((((((((((.((((....(((.(((((((....))))))).))).)))).)))))))).))))).)))
))))))))).)).)))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
TCACACCAGATTGAGAGAGGCTGACAGAAGAGAGTGAGCACATGCTAGTGGTATTTGTATGAGGGCATACAATTGCGGGTGCGTGCTCACTTCTCTATCT
GTCAGCTTCCCATTCTTTTTTACT
dot-bracket secondary structure
.......(((.((...(((((((((((((((((((((((((.((((....(((.(((((((....))))))).))).)))).)))))))).))))).)))
))))))))).)).)))........
SIMILARITIES| miRBase gma-MIR156a: 5e-65 PMRD gma-miR156a: 5e-65 microPC miR156: 1e-41 | UniProt no hits RFAM mir-156: 0.00000000000003 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST046794) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
