ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GTAGCATCATCAAGATTCA mismatches: 0 bulges: 2 |
pre-miRNA
TGACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAATGAAGGTGGGTGGGACTATGATGCAATCCAAGTGCTCTGCCAATCCATCGGT
CTTTTTGATGTGAGAATCTTGATGATGCTGCATCAGCCATAAACGGCTTTA
dot-bracket secondary structure
....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((((.((.....((.(((.......)))))..)).)))))))..)
)..))))))))))..))))))))))))))))))).))....)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TGACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAATGAAGGTGGGTGGGACTATGATGCAATCCAAGTGCTCTGCCAATCCATCGGT
CTTTTTGATGTGAGAATCTTGATGATGCTGCATCAGCCATAAACGGCTTTA
dot-bracket secondary structure
....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((((.((.....((.(((.......)))))..)).)))))))..)
)..))))))))))..))))))))))))))))))).))....)))))))...
SIMILARITIES| miRBase gma-MIR172b: 3e-82 PMRD gma-miR172b: 3e-82 microPC miR172: 0.000007 | UniProt no hits RFAM mir-172: 0.0000000000006 | most similar mature miRNAs |
Identical with: gma-MIR172b from miRBase (MNEST040459) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
