ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIRf564
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCATCATCAAGATTCACAT miRNA* GTGAGAATCTTGATGATGCTGCA mismatches: 0 bulges: 2 |
pre-miRNA
TTGACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAATGAAGGTGGGTGGGACTATGATGCAATCCAAGTGCTCTGCCAATCCATCGG
TCTTTTTGATGTGAGAATCTTGATGATGCTGCATCAGCCATAAACGGCTTTAA
dot-bracket secondary structure
.....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((((.((.....((.(((.......)))))..)).)))))))..
))..))))))))))..))))))))))))))))))).))....)))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
TTGACAGTCGTTGTTTGCGGATGTAGCATCATCAAGATTCACATGCAAATGAAGGTGGGTGGGACTATGATGCAATCCAAGTGCTCTGCCAATCCATCGG
TCTTTTTGATGTGAGAATCTTGATGATGCTGCATCAGCCATAAACGGCTTTAA
dot-bracket secondary structure
.....(((((((....((.(((((((((((((((((((((((((.((((.((.(((((((.((.....((.(((.......)))))..)).)))))))..
))..))))))))))..))))))))))))))))))).))....)))))))....
SIMILARITIES| miRBase gma-MIR172b: 2e-83 PMRD gma-miR172b: 2e-83 microPC miR172: 0.000008 | UniProt no hits RFAM mir-172: 0.0000000000006 | most similar mature miRNAs |
Identical with: gma-MIR172b from miRBase (MNEST040459) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
