ABOUT THIS RECORDspecies: Glycine max
miRNA family: miR172c
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTAGCATCATCAAGATTCACA miRNA* AGAATCTTGATGATGCTGCAT mismatches: 3 bulges: 0 |
pre-miRNA
ACAGATAGATTAACAGTCGTTATTTGCGGATGTAGCATCATCAAGATTCACATGCAAGCGCAGGTGGTGGGTGGGACTTGATGCAATCTAAGTGCTGTGC
CAGCCAAGCCATAGGTCTTTTGGAACTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTCACTTTAAAAAG
dot-bracket secondary structure
..............(((((((....((.(((((((((((((((((((((...(((....)))(((..(((.(((.((.....(((.......))).)).)
)).))).))).(((.(((...))).))).))))))))))))))))))))).))....))))))).............
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAGATAGATTAACAGTCGTTATTTGCGGATGTAGCATCATCAAGATTCACATGCAAGCGCAGGTGGTGGGTGGGACTTGATGCAATCTAAGTGCTGTGC
CAGCCAAGCCATAGGTCTTTTGGAACTGAGAATCTTGATGATGCTGCATCAGCCATAAACGACTTCACTTTAAAAAG
dot-bracket secondary structure
..............(((((((....((.(((((((((((((((((((((...(((....)))(((..(((.(((.((.....(((.......))).)).)
)).))).))).(((.(((...))).))).))))))))))))))))))))).))....))))))).............
SIMILARITIES| miRBase gma-MIR172a: 6e-87 PMRD gma-miR172a: 6e-87 microPC miR172: 0.000009 | UniProt no hits RFAM mir-172: 0.0000000002 | most similar mature miRNAs |
Identical with: gma-MIR172a from miRBase (MNEST040458) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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