ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGAATCTGAGAACACAAG mismatches: 1 bulges: 1 |
pre-miRNA
CTCGGAGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTTTGA
GCCAAC
dot-bracket secondary structure
((((((((.((((.(((((((((((((((.(((....((((..(((((((.....))))))).))))...)))))))))))))))))))))).)))))))
).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCGGAGGAGTGAATCTGAGAACACAAGGCTGGTTTGCACTGCTATATCATCTATTGGTATAAGGTGAATTTACTTTGTGTTCTCAGGTCACCCCTTTGA
GCCAAC
dot-bracket secondary structure
((((((((.((((.(((((((((((((((.(((....((((..(((((((.....))))))).))))...)))))))))))))))))))))).)))))))
).....
SIMILARITIES| miRBase gma-MIR398a: 2e-55 PMRD gma-miR398a: 2e-55 microPC miR398: 3e-47 | UniProt no hits RFAM MIR398: 0.00000002 | most similar mature miRNAs |
Identical with: gma-MIR398a from miRBase (MNEST040478) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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