ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGATATTGGTCCGGTTCAATA miRNA* TTGAGCCGTGCCAATATCACG mismatches: 3 bulges: 0 |
pre-miRNA
TGTTCAACGGGATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCACGAACCAC
dot-bracket secondary structure
.((((.....(((((((((.(((((((((.((((((((..((((((((...))))))))..)))))))).))))))))).)))))))))..))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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TGTTCAACGGGATATTGGTCCGGTTCAATAAGAAAGCAATGCTCAAAATGTTTTTGGGTCCTGTTTTTTCATTGAGCCGTGCCAATATCACGAACCAC
dot-bracket secondary structure
.((((.....(((((((((.(((((((((.((((((((..((((((((...))))))))..)))))))).))))))))).)))))))))..))))...
SIMILARITIES| miRBase gma-MIR171a: 3e-50 PMRD gma-miR171a: 3e-50 microPC miR171: 5e-43 | UniProt no hits RFAM MIR171_1: 7e-24 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST046750) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
