ABOUT THIS RECORDspecies: Glycine max
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TGCATACATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCATA
TTTCATATACATACA
dot-bracket secondary structure
........((((((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).)))))
)..))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
TGCATACATATGTGTATGTGCCTGGCTCCCTGTATGCCATTTGTAGAGCTCATCGAAGCATCAATGACCTTTGTGGATGGCGTATGAGGAGCCAAGCATA
TTTCATATACATACA
dot-bracket secondary structure
........((((((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).)))))
)..))))))......
SIMILARITIES| miRBase gma-MIR160: 7e-61 PMRD gma-miR160a: 7e-61 microPC miR160: 5e-40 | UniProt no hits RFAM mir-160: 2e-30 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045108) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
