ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR4393
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAAAAGGGACAGCAGAAAA miRNA* CTCTGCTGTCCCTTTTCAAGT mismatches: 1 bulges: 0 |
pre-miRNA
GCGACTTGGCTTCTCTGCTGTCCCTTTTCAAGTTGTTCCTGTATTGTCCCTTCGAAACAATATCGTTTTTATGATTTTTAAAATTGAATCACAATTAAAT
ATTAATACAACGAGATAGTTTTGAATGGGAAGCACAAGGACAGCTTGAAAAGGGACAGCAGAAAAATCAGATCT
dot-bracket secondary structure
..((.((((.((.(((((((((((((((((((((((((.(((....((((((((((((.((.(((((.(((..((((....(((((.....)))))))))
..)))...))))).)).)))))))).))))...))).))))))))))))))))))))))))).)).)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGACTTGGCTTCTCTGCTGTCCCTTTTCAAGTTGTTCCTGTATTGTCCCTTCGAAACAATATCGTTTTTATGATTTTTAAAATTGAATCACAATTAAAT
ATTAATACAACGAGATAGTTTTGAATGGGAAGCACAAGGACAGCTTGAAAAGGGACAGCAGAAAAATCAGATCT
dot-bracket secondary structure
..((.((((.((.(((((((((((((((((((((((((.(((....((((((((((((.((.(((((.(((..((((....(((((.....)))))))))
..)))...))))).)).)))))))).))))...))).))))))))))))))))))))))))).)).)))).)).
SIMILARITIES| miRBase gma-MIR4393b: 0.0000000006 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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