ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGTCAACT miRNA* TGGCATTCTGTCCACCTCC mismatches: 4 bulges: 0 |
pre-miRNA
GAAAGGGTTGCTAACAGAGTTTATTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTGAGCCACATGTTCGTGAAGTTGGAGGTGGGCATACTGTC
AACTGAGTTCTGTTGTCTGCTCTTTGTAAATCCT
dot-bracket secondary structure
.(((((((...((((((((((((((((((...((((((((((((((((..((.(((.....)))......))....)))).))))))))))))...))))
)).))))))))))))...))))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
GAAAGGGTTGCTAACAGAGTTTATTGGCATTCTGTCCACCTCCACTTCCTACTCTCTCTCTGAGCCACATGTTCGTGAAGTTGGAGGTGGGCATACTGTC
AACTGAGTTCTGTTGTCTGCTCTTTGTAAATCCT
dot-bracket secondary structure
.(((((((...((((((((((((((((((...((((((((((((((((..((.(((.....)))......))....)))).))))))))))))...))))
)).))))))))))))...))))))).........
SIMILARITIES| miRBase gma-MIR394b: 3e-54 PMRD ptc-miRf10096-akr: 0.000000000002 microPC miR394: 3e-39 | UniProt no hits RFAM MIR394: 0.0000000001 | most similar mature miRNAs |
Identical with: miR394 from microPC (MNEST045941) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
