ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIRf233
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATCGTCTTCTTCCTCGCTTT miRNA* ACGAGGAAGAAGACGAGATC mismatches: 2 bulges: 1 |
pre-miRNA
ATTTACCAGTTTTTGAACTAGAATCGTCTTCTTCCTCGCTTTCTAACGGCGCAATAGCGGGCATCGTCATCGGCTCTTTTATTTTTGTTCTTATATGCGC
TTCTGGTTTTTACTTATGGTGGCGAATGAACAAAGCGAACGAGGAAGAAGACGAGATCGAAGAC
dot-bracket secondary structure
........((((((((.......(((((((((((((((.(((.(((.((.((.((.((((...)))).))..)).)).))).((((((((.......(((
(.(((...........))).))))...)))))))).))))))))))))))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
ATTTACCAGTTTTTGAACTAGAATCGTCTTCTTCCTCGCTTTCTAACGGCGCAATAGCGGGCATCGTCATCGGCTCTTTTATTTTTGTTCTTATATGCGC
TTCTGGTTTTTACTTATGGTGGCGAATGAACAAAGCGAACGAGGAAGAAGACGAGATCGAAGAC
dot-bracket secondary structure
........((((((((.......(((((((((((((((.(((.(((.((.((.((.((((...)))).))..)).)).))).((((((((.......(((
(.(((...........))).))))...)))))))).))))))))))))))))))..))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9M9E0|LRKS1_ARATH: 0.00002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
