ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR1509
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAATCAAGGAAATCACGGTCG miRNA* ACCGTGTTTCCTTGGTTAACG mismatches: 0 bulges: 1 |
pre-miRNA
GGTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGT
TTCCTTGGTTAACGATATGTGCTGGATCATAG
dot-bracket secondary structure
....(((((((.(((((.((.(((((((((((((.((((((((.......((((((...................))))))..........)))))))))
)))))))))))).)).))))).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
GGTTTGATTCACTGCATCTTCTTAATCAAGGAAATCACGGTCGCGTGTGTGCCGGAAAGAAAGTGGCCTGTGATCTCCGGTTTCTCTTTCTCGACCGTGT
TTCCTTGGTTAACGATATGTGCTGGATCATAG
dot-bracket secondary structure
....(((((((.(((((.((.(((((((((((((.((((((((.......((((((...................))))))..........)))))))))
)))))))))))).)).))))).)))))))...
SIMILARITIES| miRBase gma-MIR1509a: 2e-58 PMRD no hits microPC miR1509: 2e-46 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: gso-MIR1509a from miRBase (MNEST040638) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
