ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGGAACAGGCAGAGCATGG miRNA* ATGCACTGCCTCTTCCCTGGC mismatches: 3 bulges: 0 |
pre-miRNA
GAGGTAATAATAGTTAGAGACAGGACAAAGCAGGGGAACAGGCAGAGCATGGATGGAGCTATCAACACAATATTGTCAAGAAACTGAGAGTGAGAGGAGA
AATATGTTGTGGTTCTGCTCATGCACTGCCTCTTCCCTGGCTCTGTCTCCATTTCTCCTTCCCTTATTT
dot-bracket secondary structure
((((.......((..(((((..(((((.(((.((((((.((((((.((((((.((((((((.(((((...((((.((.....(((...))).....))..
))))))))))))))))).)))))).)))))).)))))).))).)))))...))))).))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGGTAATAATAGTTAGAGACAGGACAAAGCAGGGGAACAGGCAGAGCATGGATGGAGCTATCAACACAATATTGTCAAGAAACTGAGAGTGAGAGGAGA
AATATGTTGTGGTTCTGCTCATGCACTGCCTCTTCCCTGGCTCTGTCTCCATTTCTCCTTCCCTTATTT
dot-bracket secondary structure
((((.......((..(((((..(((((.(((.((((((.((((((.((((((.((((((((.(((((...((((.((.....(((...))).....))..
))))))))))))))))).)))))).)))))).)))))).))).)))))...))))).))..))))....
SIMILARITIES| miRBase vvi-MIR408: 0.0000000006 PMRD vvi-miR408: 0.0000000006 microPC miR408: 0.0000000006 | UniProt no hits RFAM MIR408: 0.0000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
