ABOUT THIS RECORDspecies: Glycine max
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGA
ATCGGAGGCCG
dot-bracket secondary structure
.((((((((.(((((.((((((((((.(((((.(((...((((.(((...(((.((.....)).))).))))))).))).))))).)))))))))).)))
)).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGGTTTTCGCGCGGAATGGAGGAGCGGTCGCCGGCGCCGAATTGGATCCCGCCTTGCATCAACTGA
ATCGGAGGCCG
dot-bracket secondary structure
.((((((((.(((((.((((((((((.(((((.(((...((((.(((...(((.((.....)).))).))))))).))).))))).)))))))))).)))
)).))))))))
SIMILARITIES| miRBase gma-MIR168: 2e-58 PMRD gma-miR168: 2e-58 microPC miR168: 4e-28 | UniProt no hits RFAM MIR168: 0.000000000000007 | most similar mature miRNAs |
Identical with: gma-MIR168 from miRBase (MNEST040448) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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