ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf234
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGCGACGGTGATGAGGACGA miRNA* GTTCTCGGCACCCTCCGCCGAC mismatches: 3 bulges: 1 |
pre-miRNA
CGGGCCGTTGTAGGCGGCTTCCGGCACCTGCGGCTGGCTCTTGTTCACCTGGATGAGGATGGACGAGGCCGCGGCGACGGTGATGAGGACGAGCCCCGCG
GCGATGGCGGCCGTGTTCTCGGCACCCTCCGCCGACATGCCCGCCGCGCCGGAGCTGATGGCGCTCTCGGCCACGTACACCACCGGCTCGACAGAATAGA
TGTT
dot-bracket secondary structure
(((((.((((((((..(((...))).)))))))).(((.(((((((((((.....))).))))))))))).((((((.((((.((((((((.((((((..
....))).)))..)))))))).)))).).)))))....)))))..((((((.......))))))....((((............)))).((((.......
))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CGGGCCGTTGTAGGCGGCTTCCGGCACCTGCGGCTGGCTCTTGTTCACCTGGATGAGGATGGACGAGGCCGCGGCGACGGTGATGAGGACGAGCCCCGCG
GCGATGGCGGCCGTGTTCTCGGCACCCTCCGCCGACATGCCCGCCGCGCCGGAGCTGATGGCGCTCTCGGCCACGTACACCACCGGCTCGACAGAATAGA
TGTT
dot-bracket secondary structure
(((((.((((((((..(((...))).)))))))).(((.(((((((((((.....))).))))))))))).((((((.((((.((((((((.((((((..
....))).)))..)))))))).)))).).)))))....)))))..((((((.......))))))....((((............)))).((((.......
))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
