ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf1673
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGGCTCCGGCTGCAGTTGCA miRNA* GGGCTGGGGCTGGGGCCGGGG mismatches: 3 bulges: 0 |
pre-miRNA
GCCGGAGCCGAGGCTGCTGCTGGGGCTGGGGCTGGGGCCGGGGCCGGGGCTGGAGCTCGACGACGACGACGACGCCGTGGCGACGAAGAAGGTGGACGAC
GACGACGACGCGGCCGCGGCGGCGCGGGAGCACAACCTTCACGCGCAGCGGCTCCGGCTGCAGTTGCACCAGCCGAGCCAGACGGCC
dot-bracket secondary structure
((((..((...(((((.(((...(((((.(((((((((((..((((.((((...(((((.((.((.((....((((.((....)).....))))..)).)
).)).))).)))))).)))).(((((((((......)))).)))))..))))))))))).)))))))).)))))..))....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCCGGAGCCGAGGCTGCTGCTGGGGCTGGGGCTGGGGCCGGGGCCGGGGCTGGAGCTCGACGACGACGACGACGCCGTGGCGACGAAGAAGGTGGACGAC
GACGACGACGCGGCCGCGGCGGCGCGGGAGCACAACCTTCACGCGCAGCGGCTCCGGCTGCAGTTGCACCAGCCGAGCCAGACGGCC
dot-bracket secondary structure
((((..((...(((((.(((...(((((.(((((((((((..((((.((((...(((((.((.((.((....((((.((....)).....))))..)).)
).)).))).)))))).)))).(((((((((......)))).)))))..))))))))))).)))))))).)))))..))....)))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
