ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCTCTCCGTTCCAAAAT miRNA* TTTGGAATGGATGGAGTACTT mismatches: 2 bulges: 0 |
pre-miRNA
TCTCTTGTACTATACTCTCTCCGTTCCAAAATATAGTTCTTTTTAGCCCACATTTTTTCTATTCACATTCATTCAGATGATAATGAATATATAAATATGT
ATGATTAATCGAAAATGAATTATATTTTGGAATGGATGGAGTACTTTTTTAACA
dot-bracket secondary structure
............((((((.((((((((((((((((((((.((((.....((((.(((..((((((...((((....))))...))))))...))).))))
...........)))).)))))))))))))))))))).))))))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCTCTTGTACTATACTCTCTCCGTTCCAAAATATAGTTCTTTTTAGCCCACATTTTTTCTATTCACATTCATTCAGATGATAATGAATATATAAATATGT
ATGATTAATCGAAAATGAATTATATTTTGGAATGGATGGAGTACTTTTTTAACA
dot-bracket secondary structure
............((((((.((((((((((((((((((((.((((.....((((.(((..((((((...((((....))))...))))))...))).))))
...........)))).)))))))))))))))))))).))))))...........
SIMILARITIES| miRBase osa-MIR1439: 0.0005 PMRD osa-miRf11780-akr: 0.0005 microPC no hits | UniProt no hits RFAM MIR1122: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
