ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR394
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGGGCATACTGCCAATGG miRNA* TTGGCATTCTGTCCACCTCC mismatches: 3 bulges: 1 |
pre-miRNA
GCCATGTGCGCTTATCAAAGGGTGGCGCTTACTGAGAGTTCCTTGGCATTCTGTCCACCTCCCTTCTTGACGATCTTGCAGAAAGTTTGCTTTTTTTGTT
TGTTTGGAGGTGGGCATACTGCCAATGGAGCTGCGTAGGCCTCCCTTTGTAAAGCCCGCATGACATA
dot-bracket secondary structure
..((((((.((((..(((((((.((.((((((.(..((((((((((((...(((((((((((......(((((....(((((...))))).....)))))
.....)))))))))))...)))))).)))))).))))))))))))))))..)))).)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GCCATGTGCGCTTATCAAAGGGTGGCGCTTACTGAGAGTTCCTTGGCATTCTGTCCACCTCCCTTCTTGACGATCTTGCAGAAAGTTTGCTTTTTTTGTT
TGTTTGGAGGTGGGCATACTGCCAATGGAGCTGCGTAGGCCTCCCTTTGTAAAGCCCGCATGACATA
dot-bracket secondary structure
..((((((.((((..(((((((.((.((((((.(..((((((((((((...(((((((((((......(((((....(((((...))))).....)))))
.....)))))))))))...)))))).)))))).))))))))))))))))..)))).)))))).....
SIMILARITIES| miRBase zma-MIR394b: 2e-52 PMRD zma-miR394b: 2e-52 microPC miR394: 0.00003 | UniProt no hits RFAM MIR394: 4e-45 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
