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ABOUT THIS RECORD
ID:
MNEST003623
species:
Zea mays
miRNA family:
miR169o
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGCAGGTCTTCTTGGCTAGAC
miRNA*
TAGCCAAGAATGACTTGCCTA
mismatches:
2
bulges:
1
View larger
pre-miRNA
TGCAGGCATGGATGAAGGTTAAAAAGAAAAAGAGGAGGGCGGCCTCACATGGAGATGGAGAGCCCCTTTTGG
TAGCCAAGAATGACTTGCCTA
TGCACGC
CCTCTGTTGGTAGTTCCGTCCGGCAGCCATGGCGACGGTTGCACAAGGTGAGTTTTTGCGGCGTGGAGGATGCAATGCGGCTGCATC
GGCAGGTCTTCTT
GGCTAGAC
AGAGGGCTCTCGTCCACCATGCCAGGCCTCCCTCTTCAAAATTTCCCTGATTTTTGCCCTCTGCACATG
dot-bracket secondary structure
((((((...((.(((((((((....((((..((((((((.(((((..(((((.((((.(((((((..((((.
((((((((((.((((((((.(
((((.((
(...(((((.....(((.((((...(((.(((.(((...(((.....))).))).))).))).)))))))..))))).)))))))).
)))))))))))))
)))))..)
))))))))))))))..)))))..))))).))))))))....))))..))))))))).))))))))....
SIMILARITIES
miRBase
zma-MIR169o
:
3e-65
PMRD
sbi-miR169i
:
2e-29
microPC
no hits
UniProt
no hits
RFAM
MIR169_5: 2e-88
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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