ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCTACA mismatches: 1 bulges: 1 |
pre-miRNA
TGCCATGTGCTATGAGGTAGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGCTGAGGCTTAGAACTC
AGTCGGCAAGTCTGTCCTTGGCTACACCTAGTTCTCTTCCTCTCGTGTATGGCC
dot-bracket secondary structure
.(((((((((...((((.((((((((((.((.((((((((((((((((((((((...........(((..((((((((.....))))))))......)))
)))))))))))).)))))))))).))))).))))))).))))..))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCCATGTGCTATGAGGTAGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGAACCTGGAGGCGTCTCAGCTTGCTGCTGAGGCTTAGAACTC
AGTCGGCAAGTCTGTCCTTGGCTACACCTAGTTCTCTTCCTCTCGTGTATGGCC
dot-bracket secondary structure
.(((((((((...((((.((((((((((.((.((((((((((((((((((((((...........(((..((((((((.....))))))))......)))
)))))))))))).)))))))))).))))).))))))).))))..))))))))).
SIMILARITIES| miRBase zma-MIR169c: 1e-60 PMRD zma-miR169c: 1e-60 microPC miR169: 1e-41 | UniProt no hits RFAM MIR169_2: 2e-50 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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