ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR169j
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGTCTCCTTGGCTAGCCT miRNA* GATAGCCAAGGATGACTTGCCTA mismatches: 4 bulges: 2 |
pre-miRNA
CTGCCTCTGATAGCCAAGGATGACTTGCCTATGTCCTTTGTTTACAAAGGATCAAAATTGTGGACCTTTGTGTTGGTTCGTAGGCAGTCTCCTTGGCTAG
CCTGAGTG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((......((((((((.(((......))).))))))))..))..))))))))))))))))))))).
...)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGCCTCTGATAGCCAAGGATGACTTGCCTATGTCCTTTGTTTACAAAGGATCAAAATTGTGGACCTTTGTGTTGGTTCGTAGGCAGTCTCCTTGGCTAG
CCTGAGTG
dot-bracket secondary structure
....(((...((((((((((.((((.(((((((.((......((((((((.(((......))).))))))))..))..))))))))))))))))))))).
...)))..
SIMILARITIES| miRBase zma-MIR169h: 2e-54 PMRD zma-miR169h: 2e-54 microPC miR169: 0.00000002 | UniProt no hits RFAM MIR169_2: 1e-40 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
