ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* GGCAGTCTCCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
CGAGATGAAAAGAGAGCGAGGCTTACATGGCGATGAGAGTGGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTGCTGGCCACGCTCCCCTCATGCAAG
GACCATCTCGTGTCGACCGACGAGCGAGCGAGCGATCGATCGATGAGAGGATGACGAAGCTTGGGGTGTACGTTGGTCTCTCACGGGCAGTCTCCTTGGC
TAGCCCTGACTCACTCTTACCGCCCATGCTAGCCTCTGCATCTCTCGTGTTG
dot-bracket secondary structure
...((((...(((((((((((((..(((((((.(((((((((....((.((((((((((((.((((.(((((((....(((((((..((((....((...
...(((((..((((((.(((...((......))..))).))))))...))))).....))..))))....)).)))))...)))))))))))))))))))
)).))..)).))))))))).)).)))))..)))))).)).)))))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGAGATGAAAAGAGAGCGAGGCTTACATGGCGATGAGAGTGGTAGCTCTGGTAGCCAAGGATGACTTGCCTGTGTGCTGGCCACGCTCCCCTCATGCAAG
GACCATCTCGTGTCGACCGACGAGCGAGCGAGCGATCGATCGATGAGAGGATGACGAAGCTTGGGGTGTACGTTGGTCTCTCACGGGCAGTCTCCTTGGC
TAGCCCTGACTCACTCTTACCGCCCATGCTAGCCTCTGCATCTCTCGTGTTG
dot-bracket secondary structure
...((((...(((((((((((((..(((((((.(((((((((....((.((((((((((((.((((.(((((((....(((((((..((((....((...
...(((((..((((((.(((...((......))..))).))))))...))))).....))..))))....)).)))))...)))))))))))))))))))
)).))..)).))))))))).)).)))))..)))))).)).)))))..)))).
SIMILARITIES| miRBase zma-MIR169i: 7e-106 PMRD zma-miR169i: 7e-106 microPC miR169: 1e-82 | UniProt no hits RFAM MIR169_5: 0.00000000007 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045464) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
