ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR1436
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATTTTGGGACGGAGGGAGT miRNA* TCCCTCCGTCCCAAAATATTA mismatches: 0 bulges: 0 |
pre-miRNA
TGATATTATATACTCCCTCCGTCCCAAAATATTAGTCGTTTTAGCCATTGAATTTATGTCTATATTTAAATGAATGACAATGAATCTATATATAATATAA
AACACATACATTAAGTATTGTATGAATCTAGTAAAATGCTAAAACGACTAATATTTTGGGACGGAGGGAGTACAAAATAAC
dot-bracket secondary structure
..........(((((((((((((((((((((((((((((((((((....((.(((((((.(((((.((.((..((....))..)).)).)))))))))))
)...((((((........))))))..)).........))))))))))))))))))))))))))))))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGATATTATATACTCCCTCCGTCCCAAAATATTAGTCGTTTTAGCCATTGAATTTATGTCTATATTTAAATGAATGACAATGAATCTATATATAATATAA
AACACATACATTAAGTATTGTATGAATCTAGTAAAATGCTAAAACGACTAATATTTTGGGACGGAGGGAGTACAAAATAAC
dot-bracket secondary structure
..........(((((((((((((((((((((((((((((((((((....((.(((((((.(((((.((.((..((....))..)).)).)))))))))))
)...((((((........))))))..)).........))))))))))))))))))))))))))))))))))).........
SIMILARITIES| miRBase tae-MIR1122: 0.00004 PMRD tmo-miR1122: 0.0000006 microPC miR1439: 0.000009 | UniProt no hits RFAM MIR1122: 0.0000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
