ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf564
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCACCACCAAGATTCACAT miRNA* GAGAATCTTGATGATGCTGCA mismatches: 3 bulges: 0 |
pre-miRNA
AGCAAACATCGACAGTGGGTGCTTGCAGGTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTC
GCAGCAGCTATATGCATATGTGATGAGATGAGAATCTTGATGATGCTGCATCAGCAGACACTCACTCATCACACCAAC
dot-bracket secondary structure
..........((.((((((((.((((.(((((((((.((.((((((((.((((...........((((..((...(((((((...(((((((((....))
)))).)))..))))))).)).)))).)))).)))))))).)).))))))))).)))).))))))))..))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCAAACATCGACAGTGGGTGCTTGCAGGTGCAGCACCACCAAGATTCACATCCAACTCTCACGCATCTTCAGTGATGCATGCATGCTCTGTGATGTCTC
GCAGCAGCTATATGCATATGTGATGAGATGAGAATCTTGATGATGCTGCATCAGCAGACACTCACTCATCACACCAAC
dot-bracket secondary structure
..........((.((((((((.((((.(((((((((.((.((((((((.((((...........((((..((...(((((((...(((((((((....))
)))).)))..))))))).)).)))).)))).)))))))).)).))))))))).)))).))))))))..))........
SIMILARITIES| miRBase zma-MIR172c: 2e-65 PMRD zma-miR172c: 2e-65 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 8e-25 | most similar mature miRNAs |
Identical with: zma-MIR172c from miRBase (MNEST042777) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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