ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR159g
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGCTCCCTTCACACCAATAA miRNA* TTTGGAGTGAAGGGAGCTCTG mismatches: 5 bulges: 0 |
pre-miRNA
GTCTTAAGGCGGTGCTCCCTTCACACCAATAAACGGTCGATCTGATGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTGTCCCATCTCATCAGAGAGAG
AGAAGATCGTGAGAGAGCGAGAGATGCTTGAGATGGGCTTGTGGTTTGCATGACCGAGGAGCTGCCTCGTCCCCTTCGTTGACCGCTGTTTGGAGTGAAG
GGAGCTCTGCATCTTGC
dot-bracket secondary structure
........((((.(((((((((((.((((....(((((((..(((.((((((..(((((.((((.(((((....((((.(.((((((((.(((..((...
......)).)))..(((((.....))))))))))))))..))))....))))).)))).)))))..))).)))..))))))))))....)))).))))))
))))).)))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCTTAAGGCGGTGCTCCCTTCACACCAATAAACGGTCGATCTGATGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTGTCCCATCTCATCAGAGAGAG
AGAAGATCGTGAGAGAGCGAGAGATGCTTGAGATGGGCTTGTGGTTTGCATGACCGAGGAGCTGCCTCGTCCCCTTCGTTGACCGCTGTTTGGAGTGAAG
GGAGCTCTGCATCTTGC
dot-bracket secondary structure
........((((.(((((((((((.((((....(((((((..(((.((((((..(((((.((((.(((((....((((.(.((((((((.(((..((...
......)).)))..(((((.....))))))))))))))..))))....))))).)))).)))))..))).)))..))))))))))....)))).))))))
))))).)))).......
SIMILARITIES| miRBase zma-MIR159i: 7e-47 PMRD zma-miR159b: 2e-44 microPC miR319: 0.00000000001 | UniProt no hits RFAM MIR159: 3e-46 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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