ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGAGTGAAGGGAGCTCTG miRNA* GTGCTCCCTTCACACCAATAA mismatches: 3 bulges: 0 |
pre-miRNA
TGGTCTTAAGGCGGTGCTCCCTTCACACCAATAAACGGTCGATCTGATGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTGTCCCATCTCATCAGAGAG
AGAGAAGATCGTGAGAGAGCGAGAGATGCTTGAGATGGGCTTGTGGTTTGCATGACCGAGGAGCTGCCTCGTCCCCTTCGTTGACCGCTGTTTGGAGTGA
AGGGAGCTCTGCATCTTGCTC
dot-bracket secondary structure
..........((((.(((((((((((.((((....(((((((..(((.((((((..(((((.((((.(((((....((((.(.((((((((.(((..((.
........)).)))..(((((.....))))))))))))))..))))....))))).)))).)))))..))).)))..))))))))))....)))).))))
))))))).)))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGTCTTAAGGCGGTGCTCCCTTCACACCAATAAACGGTCGATCTGATGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTGTCCCATCTCATCAGAGAG
AGAGAAGATCGTGAGAGAGCGAGAGATGCTTGAGATGGGCTTGTGGTTTGCATGACCGAGGAGCTGCCTCGTCCCCTTCGTTGACCGCTGTTTGGAGTGA
AGGGAGCTCTGCATCTTGCTC
dot-bracket secondary structure
..........((((.(((((((((((.((((....(((((((..(((.((((((..(((((.((((.(((((....((((.(.((((((((.(((..((.
........)).)))..(((((.....))))))))))))))..))))....))))).)))).)))))..))).)))..))))))))))....)))).))))
))))))).)))).........
SIMILARITIES| miRBase zma-MIR159i: 5e-48 PMRD zma-miR159b: 1e-45 microPC miR319: 0.00000000001 | UniProt no hits RFAM MIR159: 2e-47 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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