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ABOUT THIS RECORD
ID:
MNEST003637
species:
Zea mays
miRNA family:
miR398a
source:
miRNEST
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGGGCGAACTGAGAACACATA
miRNA*
TGTGTTCTCAGGTCGCCCCCG
mismatches:
3
bulges:
0
View larger
pre-miRNA
CGCGATGCAAGGCAGTTCCGGCG
GGGGCGAACTGAGAACACATA
AGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCG
CCGTTCATCTTGTATGCATAATGCTGCA
TGTGTTCTCAGGTCGCCCCCG
CAAGGCCTTCCTTGCTACTG
dot-bracket secondary structure
......((((((.((..((.(((
(((((((.(((((((((((..
..(((((((.((..((..((((((..((((((........)))))))))).))..)
).))..))))))).((((......))))
))))))))))).)))))))))
)..)).)).)))))).....
SIMILARITIES
miRBase
zma-MIR398a
:
5e-44
PMRD
zma-miR398b
:
5e-44
microPC
miR398
:
0.000008
UniProt
no hits
RFAM
MIR398: 0.0000006
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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