ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR398a
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGCGAACTGAGAACACATA miRNA* TGTGTTCTCAGGTCGCCCCCG mismatches: 3 bulges: 0 |
pre-miRNA
CGCGATGCAAGGCAGTTCCGGCGGGGGCGAACTGAGAACACATAAGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCG
CCGTTCATCTTGTATGCATAATGCTGCATGTGTTCTCAGGTCGCCCCCGCAAGGCCTTCCTTGCTACTG
dot-bracket secondary structure
......((((((.((..((.((((((((((.(((((((((((....(((((((.((..((..((((((..((((((........)))))))))).))..)
).))..))))))).((((......))))))))))))))).))))))))))..)).)).)))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGCGATGCAAGGCAGTTCCGGCGGGGGCGAACTGAGAACACATAAGACGAGATTGCTCGCCTCGCGGTACGGTTCGTGCTGGCCTGGACCACCGTCGTCG
CCGTTCATCTTGTATGCATAATGCTGCATGTGTTCTCAGGTCGCCCCCGCAAGGCCTTCCTTGCTACTG
dot-bracket secondary structure
......((((((.((..((.((((((((((.(((((((((((....(((((((.((..((..((((((..((((((........)))))))))).))..)
).))..))))))).((((......))))))))))))))).))))))))))..)).)).)))))).....
SIMILARITIES| miRBase zma-MIR398a: 5e-44 PMRD zma-miR398b: 5e-44 microPC miR398: 0.000008 | UniProt no hits RFAM MIR398: 0.0000006 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
