ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCCG miRNA* GGGGCGGACTGGGAACACATG mismatches: 2 bulges: 0 |
pre-miRNA
GGGGGCGGACTGGGAACACATGGGAATGAGATGAGATCATTGCTCGGTCGTGCTGGCCTGGGCCGTCGGCGCGCGTTGATCTTGCATGTGTTCTCAGGTC
GCCCCCGGAGGGCCTTCCTTGCTGCTGTGTTCCGCTA
dot-bracket secondary structure
((((((((.(((((((((((((.........((((((((.(((...((((...((((....)))).))))..))).))))))))))))))))))))).))
)))))).(((((...)))))...((........))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGGGCGGACTGGGAACACATGGGAATGAGATGAGATCATTGCTCGGTCGTGCTGGCCTGGGCCGTCGGCGCGCGTTGATCTTGCATGTGTTCTCAGGTC
GCCCCCGGAGGGCCTTCCTTGCTGCTGTGTTCCGCTA
dot-bracket secondary structure
((((((((.(((((((((((((.........((((((((.(((...((((...((((....)))).))))..))).))))))))))))))))))))).))
)))))).(((((...)))))...((........))..
SIMILARITIES| miRBase zma-MIR398b: 1e-56 PMRD zma-miR398c: 5e-56 microPC miR398: 3e-54 | UniProt no hits RFAM MIR398: 1e-60 | most similar mature miRNAs |
Identical with: zma-MIR398b from miRBase (MNEST042818) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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