ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGTTCAATAAAGCTGTGG miRNA* ACAGCTTTCTTGAACTGCATC mismatches: 2 bulges: 0 |
pre-miRNA
ATGGCCCTCCCTGCCATCTTCCACAGCTTTCTTGAACTGCATCATGCATGCAGCAGGCTGTGCTGTGGACCTGATCGAGTTTCAATTGATCCAAGCAAGC
AAGAGGGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACC
dot-bracket secondary structure
......(((.((((.((.((((((((((((.(((((((((.((.(((.(((((((.....)))).((((..((((.((...)).)))).)))).))).))
).))..))))))))).)))))))))))).)).)))).))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGGCCCTCCCTGCCATCTTCCACAGCTTTCTTGAACTGCATCATGCATGCAGCAGGCTGTGCTGTGGACCTGATCGAGTTTCAATTGATCCAAGCAAGC
AAGAGGGCAGTTCAATAAAGCTGTGGGAAATTGCAGAGAGAGACC
dot-bracket secondary structure
......(((.((((.((.((((((((((((.(((((((((.((.(((.(((((((.....)))).((((..((((.((...)).)))).)))).))).))
).))..))))))))).)))))))))))).)).)))).))).....
SIMILARITIES| miRBase zma-MIR396g: 4e-60 PMRD zma-miR396h: 2e-61 microPC miR396: 9e-58 | UniProt no hits RFAM MIR396: 0.00000000004 | most similar mature miRNAs |
Identical with: zma-MIR396g from miRBase (MNEST042813) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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