ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CCAGTAATCAGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCAGGT
GCATGCAGTTCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAGCACCAGCAG
dot-bracket secondary structure
............((((((((((((((...((((((((((((.(((((((((((......((((((............))))))((((.((....)).)))
).))))))))))).))))))))))))...)))))))).))))))((....))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCAGTAATCAGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTCAGAGGAGCGGCAGCTTCAACTCCTCCACCCGCATCAGCAGGT
GCATGCAGTTCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCAGCACCAGCAG
dot-bracket secondary structure
............((((((((((((((...((((((((((((.(((((((((((......((((((............))))))((((.((....)).)))
).))))))))))).))))))))))))...)))))))).))))))((....))..
SIMILARITIES| miRBase zma-MIR396b: 3e-73 PMRD zma-miR396b: 3e-73 microPC miR396: 0.000000000008 | UniProt no hits RFAM MIR396: 5e-26 | most similar mature miRNAs |
Identical with: zma-MIR396h from miRBase (MNEST042814) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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