miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003644
species: Zea mays
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCCACAGCTTTCTTGAACTG

miRNA*
GTTCAATAAAGCTGTGGGAAA

mismatches: 1
bulges: 0

View larger
pre-miRNA
GCCGACGAGACATGGCCCTCCTTGCCGTCTCCCACAGCTTTCTTGAACTGCATGCCGCCGGCTGGTGGATGCTGCGCGCTGAAATTCCGGTCGATCCCAA
GAGGCGCAGTTCAATAAAGCTGTGGGAAACTGCAGAGAGAGGCCACCAGCCGATC


dot-bracket secondary structure
............((((((((.((((.((.((((((((((((.(((((((((..(((..(((((((.....((.....)).......))))))).......
..)))))))))))).)))))))))))).)).)))).))).)))))..........



SIMILARITIES
miRBase zma-MIR396a: 1e-66

PMRD zma-miR396a: 1e-66

microPC miR396: 0.000008
UniProt no hits

RFAM MIR396: 1e-54
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;