ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR167h
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCATGTTGCAGCTTCACTC miRNA* TTGAAGCTGCCAGCATGATCTG mismatches: 2 bulges: 1 |
pre-miRNA
AACACTTCGCTGGTGTGAGAGCTTGAAGCTGCCAGCATGATCTGGCTGCTCAAACGCCGCCGGCCTCCCAAGTGCTCGATCGGTGGCGCTTCACCAGATC
ATGTTGCAGCTTCACTCTCTCGCAACCAGCGAAGGG
dot-bracket secondary structure
....(((((((((((((((((..(((((((((.((((((((((((.((...((.(((((((((..((..........))))))))))).)))))))))))
))))))))))))))..))))))).))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACACTTCGCTGGTGTGAGAGCTTGAAGCTGCCAGCATGATCTGGCTGCTCAAACGCCGCCGGCCTCCCAAGTGCTCGATCGGTGGCGCTTCACCAGATC
ATGTTGCAGCTTCACTCTCTCGCAACCAGCGAAGGG
dot-bracket secondary structure
....(((((((((((((((((..(((((((((.((((((((((((.((...((.(((((((((..((..........))))))))))).)))))))))))
))))))))))))))..))))))).))))))))))..
SIMILARITIES| miRBase zma-MIR167i: 1e-68 PMRD zma-miR167i: 2e-67 microPC miR167: 0.00003 | UniProt no hits RFAM MIR167_1: 4e-60 | most similar mature miRNAs |
Identical with: zma-miR167k from PMRD (MNEST054988) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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