ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
TTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCAGAAACATACAGATCTCATCGGTCTAGGTTCTTGTCGATCTCGGACCAGGCTTCATTCCCCTCAA
GTGG
dot-bracket secondary structure
.(((((.((((((((((..((((((.(((((((((((.(((....(((((.....)))))..))).))))..))))))).))))))..))))))))))))
))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCAGAAACATACAGATCTCATCGGTCTAGGTTCTTGTCGATCTCGGACCAGGCTTCATTCCCCTCAA
GTGG
dot-bracket secondary structure
.(((((.((((((((((..((((((.(((((((((((.(((....(((((.....)))))..))).))))..))))))).))))))..))))))))))))
))).
SIMILARITIES| miRBase zma-MIR166e: 3e-44 PMRD zma-miR166p: 5e-49 microPC miR166: 5e-43 | UniProt no hits RFAM mir-166: 1e-46 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST046839) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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