ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR171f
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGATGTTGGCATGGCTCAATC miRNA* TTGAGCCGTGCCAATATCACA mismatches: 1 bulges: 0 |
pre-miRNA
TGGTTGTTGGCTGAGAGAGTGCGATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTATAGCTTAATTCTGCGCATTCGATCGAGGTGCGGG
CGCAGTGTTTAATTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTATAT
dot-bracket secondary structure
....(((.(((((((((.((..(((((((((((((((((((((((((((.....))))))((((...))))(((..((((((.(((....)))......)
)))))...)))..)))))))))))))))))))))...)).))))).)))).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGGTTGTTGGCTGAGAGAGTGCGATGTTGGCATGGCTCAATCAACTCGCCGGCCGCGGGTGGCTTATAGCTTAATTCTGCGCATTCGATCGAGGTGCGGG
CGCAGTGTTTAATTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGCCTATAT
dot-bracket secondary structure
....(((.(((((((((.((..(((((((((((((((((((((((((((.....))))))((((...))))(((..((((((.(((....)))......)
)))))...)))..)))))))))))))))))))))...)).))))).)))).))).
SIMILARITIES| miRBase zma-MIR171f: 5e-84 PMRD zma-miR171f: 5e-84 microPC miR171: 2e-62 | UniProt no hits RFAM MIR171_1: 8e-71 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045966) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
