ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGGCTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
AAGAAATGGAAGTGTAACTATGGTGTTGGCTCGGCTCACTCAGAAGTTGAAGCCGAATCCAAATGGTAGCTGCCGGCGTTTCTGATTGAGCCGTGCCAAT
ATCTCAGTACTCTTTCATGCTGA
dot-bracket secondary structure
.((..(((((((.(((.((..(((((((((.(((((((.(((((((.....((((...((....)).......)))).))))))).))))))).))))))
)))..))))).))))))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAAATGGAAGTGTAACTATGGTGTTGGCTCGGCTCACTCAGAAGTTGAAGCCGAATCCAAATGGTAGCTGCCGGCGTTTCTGATTGAGCCGTGCCAAT
ATCTCAGTACTCTTTCATGCTGA
dot-bracket secondary structure
.((..(((((((.(((.((..(((((((((.(((((((.(((((((.....((((...((....)).......)))).))))))).))))))).))))))
)))..))))).))))))).))..
SIMILARITIES| miRBase zma-MIR171d: 2e-64 PMRD zma-miR171d: 2e-64 microPC miR171: 0.00000002 | UniProt no hits RFAM MIR171_1: 5e-53 | most similar mature miRNAs |
Identical with: zma-miR171d from PMRD (MNEST055031) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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