ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGTGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
GGGATCGATATGCCTGGCTCCCTGTATGCCACTCGCATGGCTGCCAACTCATCATGCATACACTGCTAGCTAGTCGTTGGCTCCACTGCGGATGGCGTGC
GTGGAGCCAAGCATGACCGATC
dot-bracket secondary structure
..(((((.(((((.(((((((.(((((((((.((((((((..((((((.......(((.....))).........)))))).))).))))).))))))))
).))))))).)))))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGATCGATATGCCTGGCTCCCTGTATGCCACTCGCATGGCTGCCAACTCATCATGCATACACTGCTAGCTAGTCGTTGGCTCCACTGCGGATGGCGTGC
GTGGAGCCAAGCATGACCGATC
dot-bracket secondary structure
..(((((.(((((.(((((((.(((((((((.((((((((..((((((.......(((.....))).........)))))).))).))))).))))))))
).))))))).)))))..)))))
SIMILARITIES| miRBase zma-MIR160d: 5e-65 PMRD zma-miR160d: 5e-65 microPC miR160: 1e-53 | UniProt no hits RFAM mir-160: 2e-46 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046088) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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