ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR160g
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCAAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
GTGTCGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCAACCCGTGGCGTGATTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATAACA
dot-bracket secondary structure
.(((.((((((((.(((((((.((((((((((.(((((.((((.....))))...))........))).)))))))))).))))))).)))))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGTCGTGTGTGCCTGGCTCCCTGTATGCCACACATGTAGCCAACCCGTGGCGTGATTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCATAACA
dot-bracket secondary structure
.(((.((((((((.(((((((.((((((((((.(((((.((((.....))))...))........))).)))))))))).))))))).)))))))).)))
SIMILARITIES| miRBase zma-MIR160b: 5e-52 PMRD zma-miR160b: 5e-52 microPC miR160: 4e-22 | UniProt no hits RFAM mir-160: 5e-43 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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