ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGCCTCAAGCTTGCTGCC miRNA* CACCAAGCATGAGGCAGGAAC mismatches: 3 bulges: 0 |
pre-miRNA
TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGTACACTGCATTACTTGCAAGAAAGTCACAAAATCCATT
GCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG
dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.((((((((((((((((((((((...((.((..(((((((.................))
))))))))))))))))))))))))))))))).)))))))).)))))))).))))).))))..))..)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGTACACTGCATTACTTGCAAGAAAGTCACAAAATCCATT
GCAAGATCATACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG
dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.((((((((((((((((((((((...((.((..(((((((.................))
))))))))))))))))))))))))))))))).)))))))).)))))))).))))).))))..))..)))...
SIMILARITIES| miRBase ssp-MIR444b: 5e-41 PMRD tae-miR444: 4e-23 microPC miR444: 3e-33 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001 RFAM MIR444: 1e-85 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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