ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGCTTTCTTGCAAGTTG miRNA* ATTTGCAAGAAAGTCACAAGC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTATTTGCAAGAAAGTCACAAGCTCATTCCACTCTGATTCTCTAAACTTTGGAGGTCTCTTACACCTAGG
CCTGAAAGCTCCTCTCCCATTATTTGCCTACAACATTGGAAAAGAGTTTCTCACATTATCTTAAAATCCTTTGCAAGATCATACTTGTGGCTTTCTTGCA
AGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.((((((((((((((((((((((...........((.(((((((...)))))))..)).........))
).(((((((((...(((.((...(((....))).)).)))...)))))).))).((.(((((.(((...)))..))))).))..))))))))))))))))
))).)))))))).)))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGCACCAAGCATGAGGCAGGAACTGCATTATTTGCAAGAAAGTCACAAGCTCATTCCACTCTGATTCTCTAAACTTTGGAGGTCTCTTACACCTAGG
CCTGAAAGCTCCTCTCCCATTATTTGCCTACAACATTGGAAAAGAGTTTCTCACATTATCTTAAAATCCTTTGCAAGATCATACTTGTGGCTTTCTTGCA
AGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.((((((((((((((((((((((...........((.(((((((...)))))))..)).........))
).(((((((((...(((.((...(((....))).)).)))...)))))).))).((.(((((.(((...)))..))))).))..))))))))))))))))
))).)))))))).)))))))).))))).))))..
SIMILARITIES| miRBase ssp-MIR444b: 2e-23 PMRD osa-miR444f: 4e-18 microPC miR444: 8e-87 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.000000002 RFAM MIR444: 2e-115 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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