ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGATTGTTGTCTGGCTCGGTG mismatches: 3 bulges: 0 |
pre-miRNA
TCATGCTCGGATTGGGTTAGGGGGATTGTTGTCTGGCTCGGTGTCTCCGGTCGAGACGGCCTTGCCGGCGCCGGAGCTGTCGTCGACCGGAGATCTCGGA
CCAGGCTTCAATCCCTTTAACCATGCGGCATTAGG
dot-bracket secondary structure
..(((((((.....((((((((((((((..((((((.((((.((((((((((((((((((((.((....)).)).)))))).)))))))))))).)))).
))))))..)))))))))))))).)).)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATGCTCGGATTGGGTTAGGGGGATTGTTGTCTGGCTCGGTGTCTCCGGTCGAGACGGCCTTGCCGGCGCCGGAGCTGTCGTCGACCGGAGATCTCGGA
CCAGGCTTCAATCCCTTTAACCATGCGGCATTAGG
dot-bracket secondary structure
..(((((((.....((((((((((((((..((((((.((((.((((((((((((((((((((.((....)).)).)))))).)))))))))))).)))).
))))))..)))))))))))))).)).)))))....
SIMILARITIES| miRBase zma-MIR166n: 3e-48 PMRD sbi-miR166g: 6e-40 microPC miR166: 0.0000004 | UniProt no hits RFAM mir-166: 4e-54 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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