ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR168b
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAAGTGAAT miRNA* TCGCTTGGTGCAGATCGGGAC mismatches: 3 bulges: 0 |
pre-miRNA
CCTCCGCCGCGCCGTCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCATCAAGTGAATCGGAGCCGGCG
CAGCGATA
dot-bracket secondary structure
....(((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))
).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTCCGCCGCGCCGTCTCGGGCTCGCTTGGTGCAGATCGGGACCCGCCGCCCGGCCGACGGGACGGATCCCGCCTTGCATCAAGTGAATCGGAGCCGGCG
CAGCGATA
dot-bracket secondary structure
....(((.((((((.(((.((.(((((((((((((..(((((.(((...((((.....)))).))).)))))..))))))))))))).)).))).)))))
).)))...
SIMILARITIES| miRBase zma-MIR168b: 2e-54 PMRD zma-miR168b: 2e-54 microPC miR168: 1e-28 | UniProt no hits RFAM MIR168: 4e-44 | most similar mature miRNAs |
Identical with: zma-miR168b from PMRD (MNEST055000) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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