ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR164
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGAAGCAGGGCACGTGCA miRNA* ATGTGCCCATCTTCTCCACC mismatches: 2 bulges: 1 |
pre-miRNA
GCACTTGAGAGATGTGTGTGTGGTAGACGGTGGCTGTGCGTGGTGGAGAAGCAGGGCACGTGCATTACCATCCAATGCCGCCGGGTGGGTGGGTGGAATG
GATGGATGGTTCTTGATGTGCCCATCTTCTCCACCGAGCACGAACTGTCTTGGATCCGCGCGCGCGTGCCGTACA
dot-bracket secondary structure
((((((....)).((((((((((.(((((((...(((((.(((((((((((..((((((((.((..((((((((...(((((.........)))))....
..))))))))...))))))))))..))))))))))).))))).))))))).....))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCACTTGAGAGATGTGTGTGTGGTAGACGGTGGCTGTGCGTGGTGGAGAAGCAGGGCACGTGCATTACCATCCAATGCCGCCGGGTGGGTGGGTGGAATG
GATGGATGGTTCTTGATGTGCCCATCTTCTCCACCGAGCACGAACTGTCTTGGATCCGCGCGCGCGTGCCGTACA
dot-bracket secondary structure
((((((....)).((((((((((.(((((((...(((((.(((((((((((..((((((((.((..((((((((...(((((.........)))))....
..))))))))...))))))))))..))))))))))).))))).))))))).....))))))))))))))......
SIMILARITIES| miRBase zma-MIR164b: 2e-68 PMRD zma-miR164b: 2e-68 microPC miR164: 9e-46 | UniProt no hits RFAM MIR164: 5e-17 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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