ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR396g
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTCAAGAAAGCTGTGGAAGA miRNA* TCCCACAGCTTTATTGAACTG mismatches: 2 bulges: 0 |
pre-miRNA
GCTGGCCTCTCTTTCCAGTTTCCCACAGCTTTATTGAACTGCATGCACCTGCTGATGCGGGTGGAGGAGTTGAAACTGCCGCTCCTCTGAAAGATGCAGT
TCAAGAAAGCTGTGGAAGATCACAAAGAAGGCCATC
dot-bracket secondary structure
..((((((.(((((...((((.((((((((((.(((((((((((..((((((....))))))((((((((..........)))))))).....)))))))
)))).)))))))))).))))...)))))))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTGGCCTCTCTTTCCAGTTTCCCACAGCTTTATTGAACTGCATGCACCTGCTGATGCGGGTGGAGGAGTTGAAACTGCCGCTCCTCTGAAAGATGCAGT
TCAAGAAAGCTGTGGAAGATCACAAAGAAGGCCATC
dot-bracket secondary structure
..((((((.(((((...((((.((((((((((.(((((((((((..((((((....))))))((((((((..........)))))))).....)))))))
)))).)))))))))).))))...)))))))))))..
SIMILARITIES| miRBase zma-MIR396b: 3e-63 PMRD zma-miR396b: 3e-63 microPC miR396: 0.000000002 | UniProt no hits RFAM MIR396: 9e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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