ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGCATAGGCAGAGCATG mismatches: 5 bulges: 1 |
pre-miRNA
GGGGGTTGGTTTTAATTTGAGACAGGCATAGGCAGAGCATGGGATGGGGCCATCAACAAAGTGGAGGGACTAGCTTGTGAGTGCAGAAAGAAGGTGCCAG
TGGCTCCCTGGTGAAACGATGATGGCAGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCTCCGATCCCCCACCGT
dot-bracket secondary structure
(((((((((.........(((.((((...((((((.(((.((((.(((((...(((((..((..(((((...(((..((.((((.........)))))).
.)))))))).((.........)).))..)))))..))))).)))).))).))))))....)))).)))..)))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGGGTTGGTTTTAATTTGAGACAGGCATAGGCAGAGCATGGGATGGGGCCATCAACAAAGTGGAGGGACTAGCTTGTGAGTGCAGAAAGAAGGTGCCAG
TGGCTCCCTGGTGAAACGATGATGGCAGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCTCCGATCCCCCACCGT
dot-bracket secondary structure
(((((((((.........(((.((((...((((((.(((.((((.(((((...(((((..((..(((((...(((..((.((((.........)))))).
.)))))))).((.........)).))..)))))..))))).)))).))).))))))....)))).)))..)))))))))......
SIMILARITIES| miRBase zma-MIR408: 2e-53 PMRD zma-miR408: 2e-53 microPC miR408: 0.0001 | UniProt no hits RFAM MIR408: 6e-66 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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