ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGATGAGGCAGAGCATG mismatches: 3 bulges: 0 |
pre-miRNA
TTTTGATTTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCTATCAACAAAGTGGAGGGACTAGCTTGTGAGGCAGAAAGAAGGTGCCAGTGGTTCCC
TGGCGAAACGATGATGGCAGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCGATCCCCC
dot-bracket secondary structure
.......((((((.((((((.(((((((.(((.((((.(((((...(((((..((..(((((...(((.....((((.........))))...)))))))
)(.((...))....).))..)))))..))))).)))).))).))))))).)))))).))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTTGATTTGGAGACAGGGATGAGGCAGAGCATGGGATGGGGCTATCAACAAAGTGGAGGGACTAGCTTGTGAGGCAGAAAGAAGGTGCCAGTGGTTCCC
TGGCGAAACGATGATGGCAGTGTTGTTGCTCCCTCCCCTGCACTGCCTCTTCCCTGGCTCCGATCCCCC
dot-bracket secondary structure
.......((((((.((((((.(((((((.(((.((((.(((((...(((((..((..(((((...(((.....((((.........))))...)))))))
)(.((...))....).))..)))))..))))).)))).))).))))))).)))))).))))))......
SIMILARITIES| miRBase zma-MIR408: 2e-65 PMRD zma-miR408: 2e-65 microPC miR408: 0.0001 | UniProt no hits RFAM MIR408: 1e-91 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
