ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR528
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* CCTGTGCCTGCCTCTTCCATT mismatches: 2 bulges: 0 |
pre-miRNA
AGTTTGCTCTGCTGGCTAGTAGCAGCAGCGGTGGAAGGGGCATGCAGAGGAGCACGAGCGAGGTGTGGCTGGAAGAAGCAGCCGGGGCCTGTGTGCTATA
TACCCCCTCGCAAGCTCTCCTCTCCTCTCCTCTCCTGTGCCTGCCTCTTCCATTCCTTCTGCTACGCCATTATATGTTTGCA
dot-bracket secondary structure
.((..((..((.((((..(((((((.((.(((((((((((((.(((.(((((...(((.((((.((.(((......))).((.((((...(((((...))
))).)))).))..))...))))..)))....))))).))).))))))))))))).)).))))))))))).))...))..)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTTTGCTCTGCTGGCTAGTAGCAGCAGCGGTGGAAGGGGCATGCAGAGGAGCACGAGCGAGGTGTGGCTGGAAGAAGCAGCCGGGGCCTGTGTGCTATA
TACCCCCTCGCAAGCTCTCCTCTCCTCTCCTCTCCTGTGCCTGCCTCTTCCATTCCTTCTGCTACGCCATTATATGTTTGCA
dot-bracket secondary structure
.((..((..((.((((..(((((((.((.(((((((((((((.(((.(((((...(((.((((.((.(((......))).((.((((...(((((...))
))).)))).))..))...))))..)))....))))).))).))))))))))))).)).))))))))))).))...))..)).
SIMILARITIES| miRBase zma-MIR528a: 8e-31 PMRD osa-miR528: 0.000002 microPC miR528: 2e-37 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
