ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR827
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTGGTGGTCATTTAACC miRNA* TTAGATGACCATCAGCAAAC mismatches: 0 bulges: 1 |
pre-miRNA
AGCTCCGAACCTGTTTTGTTGGTGGTCATTTAACCATGCATGCTTCGATCGATGGATTGGTGCATGCATGGATTATTGCATAGTGTGATGCATGTGGCGC
ATCAGTGCATGGTTAGATGACCATCAGCAAACATGTTCTTGAG
dot-bracket secondary structure
..(((.((((.(((((.((((((((((((((((((((((((((.((((((....)))))).))(((((........)))))....((((((.......))
))))))))))))))))))))))))))))))))).))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTCCGAACCTGTTTTGTTGGTGGTCATTTAACCATGCATGCTTCGATCGATGGATTGGTGCATGCATGGATTATTGCATAGTGTGATGCATGTGGCGC
ATCAGTGCATGGTTAGATGACCATCAGCAAACATGTTCTTGAG
dot-bracket secondary structure
..(((.((((.(((((.((((((((((((((((((((((((((.((((((....)))))).))(((((........)))))....((((((.......))
))))))))))))))))))))))))))))))))).))))..)))
SIMILARITIES| miRBase zma-MIR827: 6e-65 PMRD osa-miR827b: 0.0000001 microPC miR827: 0.000000007 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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