ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCTTTCTGTCAGC mismatches: 1 bulges: 2 |
pre-miRNA
GCGGAGAGGCTCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGACATAGCATGTATGCCGTCCTCGCCGCGTGCTCACTTCTCTTTC
TGTCAGCCTCTTTCTCTCGGTGGCT
dot-bracket secondary structure
.......((((.(((((((((((((((((((((((((((((.(((((.((((....((((...))))....))))..))))).)))))))).)))).)))
))))))......)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGAGAGGCTCTCGAGAGATTGACAGAAGAGAGTGAGCACACGGCGCGACGAACGACATAGCATGTATGCCGTCCTCGCCGCGTGCTCACTTCTCTTTC
TGTCAGCCTCTTTCTCTCGGTGGCT
dot-bracket secondary structure
.......((((.(((((((((((((((((((((((((((((.(((((.((((....((((...))))....))))..))))).)))))))).)))).)))
))))))......)))))))).))))
SIMILARITIES| miRBase zma-MIR156d: 8e-61 PMRD zma-miR156d: 8e-61 microPC miR156: 2e-42 | UniProt no hits RFAM mir-156: 1e-32 | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045823) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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