ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCAAGCTT miRNA* GCATGAGGCAGGAACTGCATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGCTCATTCCAATCTGATTCTCTAAACTTTGGAGGTCTCTTACACCTAGG
CCTGAAAGCTCCTCTCCCATTAGTTGCCTACAACATTGGAAAAGAGTTTCTCACATTATCTTAGAATCCATTGCAAGATCATACTTGTGGCTTTCTTGCA
AGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.((((((((((((((((((((....((.((((..((((((........((((((.(((((.((..((((
(((((..............))))..)))))......))...)))))..)))).)).......)))))).)))).)).......)))))))))))))))))
))).)))))))).)))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAGCTCATTCCAATCTGATTCTCTAAACTTTGGAGGTCTCTTACACCTAGG
CCTGAAAGCTCCTCTCCCATTAGTTGCCTACAACATTGGAAAAGAGTTTCTCACATTATCTTAGAATCCATTGCAAGATCATACTTGTGGCTTTCTTGCA
AGTTGTGCAGTTGTTGCCTCAAGCTTGCTGCCTC
dot-bracket secondary structure
...((((.(((((.((((((((.((((((((.((((((((((((((((((((....((.((((..((((((........((((((.(((((.((..((((
(((((..............))))..)))))......))...)))))..)))).)).......)))))).)))).)).......)))))))))))))))))
))).)))))))).)))))))).))))).))))..
SIMILARITIES| miRBase ssp-MIR444b: 1e-24 PMRD osa-miR444f: 4e-18 microPC miR444: 9e-93 | UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0000000007 RFAM MIR444: 3e-127 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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