ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGTCTCAAGCTT miRNA* GCTAGAGGCAGCAACTGCATA mismatches: 1 bulges: 0 |
pre-miRNA
TTGATGCAAGGAGCGGTGACGAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAG
TTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAA
dot-bracket secondary structure
.....((((((...((((.((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).)))))))
)))))))))).)))))).))))...))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGATGCAAGGAGCGGTGACGAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAG
TTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAA
dot-bracket secondary structure
.....((((((...((((.((((((.(((((((((((((((((.((((((((((((((((((....)))))........))))))))))))).)))))))
)))))))))).)))))).))))...))))))....
SIMILARITIES| miRBase ssp-MIR444c: 3e-54 PMRD pvi-miR444: 7e-52 microPC miR444: 2e-52 | UniProt sp|Q6EP49|MAD27_ORYSJ: 0.0003 RFAM MIR444: 6e-65 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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